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Purpose

The purpose of this document is to install and validate the (global) mAP environment.

Environment

Following environment is required for installing mAP.

Table 2‑1 Required Software

Software Name	Version	Notes
CentOS (64bit)	6.5	Operating System
Shibboleth-SP	2.5.3 (*1)	Service Provider
Shibboleth-IdP	2.4.0	Identity Provider
Apache HTTP Server	2.2.15 (*1)	WEB Server
Java	JDK 7 Update 45　or openjdk 1.6.0	IdP Executable Environment
Apache Tomcat	6.0.24 (*1)	Servlet Container
MySQL	5.1.71 (*1)	Relational Database
Postfix	2.6.6 (*1)	Mail Transfer Agent
PHP	5.3.3 (*1)	Programing Language

*1 Latest version of yum package as of 2014/2/28

Installing Shibboleth SP

Please install Shibboleth SP while referring to the install guide.

Shibboleth SP Install Guide
https://meatwiki.nii.ac.jp/confluence/display/GakuNinShibInstallen/SP+Install

In addition to shibboleth SP, apache, mod_ssl and NTP should be installed simultaneously. Please setup these environment as well.

Installing Shibboleth IdP

Please install Shibboleth IdP while referring to the install guide.

Shibboleth IdP Install Guide
https://meatwiki.nii.ac.jp/confluence/display/GakuNinShibInstallen/IdP+Install+Manual

In addition to Shibboleth IdP, Java and Tomcat should be installed as well. Please setup these environment as well.

Installing and Setting Up MySQL

Install MySQL by using following command.

$ sudo yum install mysql-server

* If the MySQL has already been installed as the initial component, you can skip this process.

Setup /etc/my.cnf

[mysqld]
datadir=/var/lib/mysql
socket=/var/lib/mysql/mysql.sock
user=mysql
symbolic-links=0
 
old_passwords=1
default-character-set = utf8
 
[mysqld_safe]
log-error=/var/log/mysqld.log
pid-file=/var/run/mysqld/mysqld.pid
 
[mysql]
default-character-set = utf8

Execute

$ sudo /etc/init.d/mysqld start 
$ sudo chkconfig mysqld on

Create Database

$ mysql -u root
CREATE DATABASE vo;
GRANT ALL PRIVILEGES ON vo.* TO 'vouser'@'localhost' IDENTIFIED BY 'YOUR OWN PASSWORD';

Installing and Setting Up PHP

Please install PHP by using following command.

$ sudo yum install php
$ sudo yum install php-devel php-gd php-mbstring php-pdo
$ sudo yum install php-mysql php-xml
$ sudo /etc/init.d/httpd restart

Setting Up Timezone

Add timezone in /etc/php.ini . Parameter “Asia/Tokyo” should be changed depending on your local time.

date.timezone = "Asia/Tokyo"

Installing and Setting Up Mail Server

Please install and setup mail server by using Postfix or Sendmail. Following instruction is for Postfix.

Install

$ sudo yum install postfix

Setup Postfix

Please modify parameters depending on your local environment.

/etc/postfix/main.cf

Execute

$ sudo /etc/init.d/postfix start
$ sudo chkconfig postfix on

Installing Attribute Provider (SP)

Shibboleth SP which has been installed in section 4 will be configured for Attribute Provider.

Download required files from following URL.

Please contact GakuNin Office if authentication is requested.

index.zip
embedded-wayf_config.js

Modify Setting

attribute-map.xml
Add the following line or make sure isMemberOf attribute is recognized.
```
    <Attribute name="urn:oid:1.3.6.1.4.1.5923.1.5.1.1" id="isMemberOf"/> 
```

attribute-policy.xml
Add the following rule before attributeID="*" line.

        <!-- isMemberOf -->
        <afp:AttributeRule attributeID="isMemberOf">
            <afp:PermitValueRule xsi:type="AttributeIssuerString"
                    value="https://[Host Name of the SP]/idp/shibboleth"/>
        </afp:AttributeRule>

Modify “[Host Name of the SP]” to this server host name.

shibboleth2.xml
Add MetadataProvider.

        <!-- Example of locally maintained metadata. -->
        <!-- Metadata of this IdP -->
        <MetadataProvider type="XML" file="/opt/shibboleth-idp/metadata/idp-metadata.xml"/>

And add SimpleAggregation AttributeResolver after <AttributeResolver type="Query" subjectMatch="true"/> line.

        <!-- Uses eduPersonPrincipalName from IdP to query, and asks for isMemberOf. -->
        <AttributeResolver type="SimpleAggregation" attributeId="eppn" format="urn:oid:1.3.6.1.4.1.5923.1.1.1.6">
          <Entity>https://[Host Name of the IdP]/idp/shibboleth</Entity>
        </AttributeResolver>

Modify “[Host Name of the IdP]” to this server host name.

embedded-wayf_config.js
Modify “Host Name of the SP” to the name of this server.
Values in wayf_additional_idps also have to be changed.
Instead, you can use your own embedded DS in app/views/pages/home.ctp.

Copy Files

$ sudo mkdir /var/www/html/secure
$ unzip index.zip
$ sudo cp index.php /var/www/html/secure/attr.php
$ sudo mkdir /var/www/html/js
$ sudo cp embedded-wayf_config.js /var/www/html/js/.

Metadata Deployment

Store the metadata of the SP of this server in the following location.
/etc/shibboleth/metadata/sp-metadata.xml
Store the metadata of this IdP of this server in the following location.
/opt/shibboleth-idp/metadata/idp-metadata.xml
* shibd have to be restarted after the “10. Installing Attribute Provider (IdP)”since the metadata of the IdP is not yet generated at this moment.
Federation Metadata
If required, federation metadata have to be included by the shibboleth2.xml configuration.

Restart

$ sudo /etc/init.d/shibd restart$ sudo /etc/init.d/httpd restart

Installing Attribute Provider (IdP)

Shibboleth IdP which has been installed in section 5 will be configured for Attribute Provider.

Download required file from following URL.

Please contact GakuNin Office if authentication is required.
attribute-resolver.xml
attribute-filter.xml

Please download mysql-connector-java-5.1.xx.zip from MySQL site:
https://www.mysql.com/downloads/connector/j/
Unzip the file and you will find the JAR file.
mysql-connector-java-5.1.xx-bin.jar

Modify Configuration

attribute-resolver.xml
Modify“SALT”to appropriate random values.
Setup database password to be the same one with “6. Installing and Setting Up MySQL”.
Modify “Host name of the IdP” to this server host name.

relying-party.xml
Add MetadataProvider for SP which utilize this mAP system.

        <metadata:MetadataProvider id="SP" xsi:type="metadata:ResourceBackedMetadataProvider">
          <metadata:MetadataResource xsi:type="resource:FilesystemResource" file="/etc/shibboleth/metadata/sp-metadata.xml" />
        </metadata:MetadataProvider>

Overwrite the configuration files.

Back Up First
$ cd /opt/shibboleth-idp/conf
$ sudo cp attribute-filter.xml attribute-filter.xml.bk
$ sudo cp attribute-resolver.xml attribute-resolver.xml.bk

Then Copy
$ cd
$ sudo cp attribute-filter.xml /opt/shibboleth-idp/conf/.
$ sudo cp attribute-resolver.xml /opt/shibboleth-idp/conf/.

Metadata Deployment

The metadata of this SP has already been stored in the following location.
/etc/shibboleth/metadata/sp-metadata.xml
Store the metadata of this IdP in the following location.
/opt/shibboleth-idp/metadata/idp-metadata.xml

Deployment of the MySQL driver

$ sudo cp mysql-connector-java-5.1.10.jar \
[TOMCAT install directory]/webapps/idp/WEB-INF/lib/.

$ sudo cp mysql-connector-java-5.1.10.jar /opt/shibboleth-idp/lib/.

Configuration for StoredID

Create table for StoredID in the MySQL database.

https://meatwiki.nii.ac.jp/confluence/display/GakuNinShibInstall/StoredID

“4. Create table in the database (In case of MySQL)”

$ mysql -u root vo
mysql> put SQL commands here.

Back Channel

Configure for back channel by referring to the following instruction.

Create credential

# cd /opt/shibboleth-idp/credentials
# openssl pkcs12 -export -out pkcs12.p12 -in idp.crt -inkey idp.key -name HOST-NAME-OF-THIS-SERVER
Enter Export Password: YOUR-OWN-PASSOWRD
Verifying - Enter Export Password: YOUR-OWN-PASSWORD

# keytool -importkeystore -srckeystore pkcs12.p12 -destkeystore keystore.jks \
-srcstoretype pkcs12 -deststoretype jks -srcalias HOST-NAME-OF-THIS-SERVER \
-destalias HOST-NAME-OF-THIS-SERVER -storepass YOUR-OWN-PASSOWRD
Enter source keystore password: YOUR-OWN-PASSOWRD
keystore.jks will be generated.
# rm pkcs12.p12
# chmod 600 /opt/shibboleth-idp/credentials/keystore.jks

* This instruction assume IdP certificate as idp.crt and idp.key.

Back Channel Port

Enable 8443 port in the server.xml of Tomcat configuration file.

Server.xml can be found in the following location if the Tomcat was installed by using yum

/usr/share/tomcat6/conf/server.xml

Add following configuration.

<Connector port="8443"
               maxHttpHeaderSize="8192"
               maxSpareThreads="75"
               scheme="https"
               secure="true"
               clientAuth="want"
               SSLEnabled="true"
               sslProtocol="TLS"
               keystoreFile="/opt/shibboleth-idp/credentials/keystore.jks"
               keystorePass="YOUR-OWN-PASSWORD"
               truststoreFile="/opt/shibboleth-idp/credentials/keystore.jks"
               truststorePass="YOUR-OWN-PASSWORD"
               truststoreAlgorithm="DelegateToApplication"/>

Deployment

$ sudo /etc/init.d/tomcat6 stop
$ sudo /etc/init.d/tomcat6 start

Restart SP as well in order to include the metadata of newly configured IdP.
$ sudo /etc/init.d/shibd restart
$ sudo /etc/init.d/httpd restart

Installing the Application

Download files from the following URL.

Please contact GakuNin Office if authentication is required.
map.zip

Deployment

$ unzip map.zip
$ sudo mv map /usr/local/.

Initial Setting

# Announce Information
$ cd /usr/local/map
$ mkdir -p app/webroot/tmp/
$ touch app/webroot/tmp/announce.txt
$ sudo chown -R apache.apache app/webroot/tmp

# Adjust permissions
$ sudo chown -R apache.apache /usr/local/map/app/tmp
$ sudo chmod +x /usr/local/map/cake/console/cake
$ sudo chmod +x /usr/local/map/app/vendors/shells/*.php
$ sudo chmod -R 777 /usr/local/map/app/tmp/cache

# Group Icons
$ sudo mkdir -p app/tmp/uploads/group/original
$ sudo mkdir -p app/tmp/uploads/group/thumbnails
$ sudo mkdir -p app/tmp/uploads/group/temp
$ sudo chown -R apache.apache app/tmp/uploads/group

# Deletion of Log Files and Cache Files
$ sudo rm -rf app/tmp/cache/models/*
$ sudo rm -rf app/tmp/cache/persistent/*
$ sudo rm -rf app/tmp/cache/views/*
$ sudo rm -rf app/tmp/logs/*

# Copy of Configuration Files
$ cp app/config/database.template.php app/config/database.php
$ cp app/config/core.template.php app/config/core.php
# Put random data on 'Security.salt' and 'Security.cipherSeed' in core.php.
$ vi app/config/core.php

# Deletion of Files for Development (if exist)
$ rm app/config/local.php

Configuration of httpd.conf

Include following configuration in /etc/httpd/conf/httpd.conf

<VirtualHost _default_:80>
  Redirect permanent / https://[HOST-NAME-OF-THIS-SERVER]/
</VirtualHost>

Alias /map "/usr/local/map"
<Directory "/usr/local/map">
  Order allow,deny
  Allow from all
  Options ExecCGI FollowSymLinks
  AllowOverride All
</Directory>

<Location "/map">
  AuthType shibboleth
  ShibRequestSetting requireSession 0
  require shibboleth
</Location>

Restart

$ sudo /etc/init.d/httpd stop
$ sudo /etc/init.d/httpd start

Database Configuration

$ mysql -u root vo < /usr/local/map/ddl/ddl.sql
$ mysql -u root vo < /usr/local/map/ddl/alter.sql
$ mysql -u root vo < /usr/local/map/ddl/index.sql
$ mysql -u root vo < /usr/local/map/ddl/init_system_admin.sql
$ mysql -u root vo
Open /usr/local/map/ddl/stored_procedure.sql and copy & paste the contents.

Application Configuration File

/usr/local/map/app/config/database.php
In the 'database' => '', set the password defined at “6. Installing and Setting Up MySQL”
/usr/local/map/app/config/mail.php
In the 'host' => '',　set the SMTP server.
In the $from, $this->from, set the FROM address of the email which will be send from this server.
In the $footer_jp_map, $footer_jp_test, $footer_eng_map and $footer_eng_test, modify to the appropriate sentences as you want.
/usr/local/map/app/config/system.php
In the "host" and the host of "loginlink" in $config["production"], $config["test"], set the host name of this server.

Registration of System Administrator
Create a new account by accessing to the following URL.
https://HOTS-NAME-OF-THIS-SERVER/map/
After selecting the IdP and then login, create a new account.

Register the Administrator of the Database.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD

mysql> select id,name,mail from accounts;
Find your ID by the above command, and then and execute the following SQL to your ID.
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(YOUR-ACCOUNT-ID, 1, 1, NOW(), NOW());

Example)
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(1, 1, 1, NOW(), NOW());

Registration of SP

By the following commands, SP information which if a part of the federaton member will be registered in the sp_hosts table of the database.

$ cd /usr/local/map/cake/console
$ ./cake -app /usr/local/map/app sp_host /var/cache/shibboleth/federation-metadata.xml

If you would like to register the SP which is not a member of the federation, it’s easy to add the SP in the /var/cache/shibboleth/federation-metadata.xml and then execute the above command.

Register SP Administrator in the Database.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD

mysql> insert into sp_administrators(eppn, host_name, entityid, created) 
values('YOUR-ePPN', 'HOST-NAME-OF-UTILIZED-SP', 
'ENTITY-ID-OF-UTILIZED-SP', NOW());


Example1）Registration for researchmap and kyouindb
mysql> insert into sp_administrators(eppn, host_name, entityid, created) \
values('xxxx@kyoto-u.ac.jp', 'researchmap.jp', 'https://researchmap.jp/shibboleth-sp', NOW());

mysql> insert into sp_administrators(eppn, host_name, entityid, created) \
values('xxxx@kyoto-u.ac.jp', 'kyouindb.iimc.kyoto-u.ac.jp', \
'https://kyouindb.iimc.kyoto-u.ac.jp/shibboleth-sp', NOW());



Exmaple2) Registration for test-meatmail.nii.ac.jp and test-map-sp1.nii.ac.jp
mysql> insert into sp_administrators(eppn, host_name, entityid, created) \
values('xxxxxx@ebook-idp.nii.ac.jp', 'test-meatmail.nii.ac.jp', \
'https://test-meatmail.nii.ac.jp/shibboleth-sp', NOW());

mysql> insert into sp_administrators(eppn, host_name, entityid, created) \
values(' xxxxxx@ebook-idp.nii.ac.jp', 'test-map-sp1.nii.ac.jp', \
'https://test-map-sp1.nii.ac.jp/shibboleth-sp', NOW());

Create SP Connector

Create SP Connector of the utilized SP by executing the following SQL.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD
mysql> insert into groups(group_key,name,introduction,active,public,openmember,\
inspectjoin,inspectquit,down_permission,up_permission,group_response,sp,\
created,modified) values('GROUP-KEY', 'SERVICE-NAME', '', 0, 1, 1, 1, 0, 2, 0, 2, 1, NOW(), NOW());

Example1）Researchmap and kyouindb
mysql> insert into groups(group_key,name,introduction,active,public,openmember,\
inspectjoin,inspectquit,down_permission,up_permission,group_response,sp,created,modified) \
values('researchmap', 'Researchmap', '', 0, 1, 1, 1, 0, 2, 0, 2, 1, NOW(), NOW());

mysql> insert into groups(group_key,name,introduction,active,public,openmember,\
inspectjoin,inspectquit,down_permission,up_permission,group_response,sp,created,modified \
) values('kyouindb', 'kyouindb', '', 0, 1, 1, 1, 0, 2, 0, 2, 1, NOW(), NOW());


Example2）test-meatmail.nii.ac.jp and test-map-sp1.nii.ac.jp
mysql> insert into groups(group_key,name,introduction,active,public,openmember,\
inspectjoin,inspectquit,down_permission,up_permission,group_response,sp,created,modified) \
values('test-meatmail.nii.ac.jp', 'test-meatmail.nii.ac.jp', '', \
0, 1, 1, 1, 0, 2, 0, 2, 1, NOW(), NOW());

mysql> insert into groups(group_key,name,introduction,active,public,openmember,\
inspectjoin,inspectquit,down_permission,up_permission,group_response,sp,created,modified) \
values('test-map-sp1.nii.ac.jp', 'test-map-sp1.nii.ac.jp', '', \
0, 1, 1, 1, 0, 2, 0, 2, 1, NOW(), NOW());

Register the administrator of SP Connector to the database.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD
mysql> select id,name,mail from accounts;
mysql> select id,group_key,name from groups where sp=1;

Find your ID and Group table ID by the search com"mand above and then put it in the "YOUR-ACCOUNT-ID"and "GroupID" in the following SQL.
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(YOUR-ACCOUNT-ID, GroupID, 1, NOW(), NOW());

Example) In case of creating 3 SP Connectors
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(1, 2, 1, NOW(), NOW());
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(1, 3, 1, NOW(), NOW());
mysql> insert into mygroups(account_id, groupid, admin, created, modified) values(1, 4, 1, NOW(), NOW());

Connection between SP Connecor and SP.

Connect SP Connector and SP by executing the following SQL.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD

Search utilizes SP Connector ID.
mysql> select id, name from groups where sp = 1;

Search utilizes SP ID
mysql> select id, name from sp_hosts;

Based on the search result, register connecting information between SP Connector and SP.
insert into group_sphosts(group_id,sp_id,lead_url,created,modified,service_name) \
values(SP-CONNECTOR-ID, SP-ID, 'SERVICE-URL', NOW(),NOW(), 'SERVICE-NAME');

・SP Connector ID：ID of groups table
・SP ID：ID of sp_hosts table


Example1）Researchmap and kyouindb
mysql> insert into group_sphosts(group_id,sp_id,lead_url,created,modified,service_name) \
values(2, 3, 'http://researchmap.jp/', NOW(),NOW(), 'Researchmap');

mysql> insert into group_sphosts(group_id,sp_id,lead_url,created,modified,service_name) \
values(3, 15, 'http://kyouindb.iimc.kyoto-u.ac.jp/', NOW(),NOW(), 'kyouindb');

Example2）test-meatmail.nii.ac.jp and test-map-sp1.nii.ac.jp
mysql> insert into group_sphosts(group_id,sp_id,lead_url,created,modified,service_name) \
values(2, 80, 'https://test-meatmail.nii.ac.jp/', NOW(),NOW(), 'Test-MeatMail');
mysql> insert into group_sphosts(group_id,sp_id,lead_url,created,modified,service_name) \
values(3, 175, 'https://test-map-sp1.nii.ac.jp/', NOW(),NOW(), 'Test-mAP-SP1');

Automatic Connection of SP Connector

This enables users to utilize SP (ex. Researchmap, kyouindb) by connecting SP connector automatically when the user create new group.

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD

Obtain ID by searching SP Connector
mysql> select id, name from groups where sp = 1;

Set the found ID in the following SQL and then execute.
mysql> insert into sp_auto_connectors(groupid,created) values(FOUND-ID, NOW());

Example）
mysql> insert into sp_auto_connectors(groupid,created) values(2, NOW());
mysql> insert into sp_auto_connectors(groupid,created) values(3, NOW());

Attribute Consent Setting for SP Connector

Set the consent information which will be utilized by the SP Connector

$ mysql -u vouser vo -pYOUR-OWN-PASSWORD


Obtain ID by searching SP Connector
mysql> select id, name from groups where sp = 1;


Set ID for SP Connector in the following SQL and then execute.
mysql> insert into provide_attributes(group_id,ismemberof,eptid,name,mail,idp,introduction,\
language,organization,created,modified) values(FOUND-ID, 1, 1, 1, 1, 1, 1, 1, 1, NOW(),NOW());


Example)
select id, name from groups where sp = 1;
+----+-------------------------+
| id | name                    |
+----+-------------------------+
|  2 | xxxxxxx                 |
|  3 | yyyyyyy                 |
|  4 | zzzzzzz                 |
mysql> insert into provide_attributes(group_id,ismemberof,eptid,name,mail,idp,introduction,\
language,organization,created,modified) values(2, 1, 1, 1, 1, 1, 1, 1, 1, NOW(),NOW());
mysql> insert into provide_attributes(group_id,ismemberof,eptid,name,mail,idp,introduction,\
language,organization,created,modified) values(3, 1, 1, 1, 1, 1, 1, 1, 1, NOW(),NOW());
mysql> insert into provide_attributes(group_id,ismemberof,eptid,name,mail,idp,introduction,\
language,organization,created,modified) values(4, 1, 1, 1, 1, 1, 1, 1, 1, NOW(),NOW());

Importing the Account Data from the Existing Database

If there exist the data in the existing database, it can be imported by means of TSV file.

Format of the TSV is as follows

Note that display name have to be within 50 characters.

LOCAL-ID(SPS-ID)<<TAB>>ePPN<<TAB>>DISPLAY-NAME(NAME)
...

Import command is as follows.

$ export TERM=vt100
$ cd /usr/local/map/cake/console
$ ./cake -app /usr/local/map/app kyoto_u_ac_jp_import [TSV-FILE-NAME] [IdP-ENTITY-ID]

Example 1）Normal Execution
$ export TERM=vt100
$ cd /usr/local/map/cake/console
$ ./cake -app /usr/local/map/app kyoto_u_ac_jp_import \
/var/local/map/tmp/kyoto-u.ac.jp.sample.tsv \
https://authidp1.iimc.kyoto-u.ac.jp/idp/shibboleth

Example 2）Send Email after Execution
$ export TERM=vt100
$ cd /usr/local/map/cake/console
$ ./cake -app /usr/local/map/app kyoto_u_ac_jp_import \
/var/local/map/tmp/kyoto-u.ac.jp.sample.tsv \
https://authidp1.iimc.kyoto-u.ac.jp/idp/shibboleth | mail -s "Import Result" EMAIL-ADDRESS

Validation

Authentication

Confirm the authentication page after accessing to the following URL.
https://HOST-NAME-OF-THIS-SERVER/secure/attr.php

SP

After integrating the metadata of this IdP into the related SPs and enable SimpleAggregation AttributeResolver, you can check the connecting test.

ページ ツリー

How to install mAP

Purpose

Environment

Installing Shibboleth SP

Installing Shibboleth IdP

Installing and Setting Up MySQL

Setup /etc/my.cnf

Execute

Create Database

Installing and Setting Up PHP

Setting Up Timezone

Installing and Setting Up Mail Server

Install

Setup Postfix

Execute

Installing Attribute Provider (SP)

Download required files from following URL.

Modify Setting

Copy Files

Metadata Deployment

Restart

Installing Attribute Provider (IdP)

Download required file from following URL.

Modify Configuration

Overwrite the configuration files.

Metadata Deployment

Deployment of the MySQL driver

Configuration for StoredID

Back Channel

Back Channel Port

Deployment

Installing the Application

Download files from the following URL.

Deployment

Initial Setting

Configuration of httpd.conf

Restart

Database Configuration

Application Configuration File

Registration of SP

Create SP Connector

Connection between SP Connecor and SP.

Automatic Connection of SP Connector

Attribute Consent Setting for SP Connector

Importing the Account Data from the Existing Database

Validation

Authentication

SP

ページツリー